Transcript: APTR:11

Basic information

LNCipedia transcript ID: APTR:11 
HGNC Gene Symbol: APTR    
HGNC Full Gene Name: Alu-mediated CDKN1A/p21 transcriptional regulator
Ensembl Gene ID: ENSG00000214293
Ensembl Transcript ID: ENST00000447009
Location (hg38): chr7:77684785-77696253
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 902 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000447009; ENST00000447009.1; AC090421.1-005; OTTHUMT00000340795.1
Alternative gene names: ENSG00000214293; AC090421.1; ENSG00000214293.4; OTTHUMG00000162596.1; RSBN1L-AS1; ENSG00000214293.8; APTR;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -130.1202 non-coding 
CPAT coding probability 3.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
APTR:11 no no no no

Available literature

  1. Negishi (2014), A new lncRNA, APTR, associates with and represses the CDKN1A/p21 promoter by recruiting polycomb proteins., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM60-1:5
3.1 lnc-TMEM60-1:5
4.0 APTR:11
4.1 APTR:11
5.0 APTR:11
5.1 APTR:11
5.2 APTR:11