Transcript: APTR:2

Basic information

LNCipedia transcript ID: APTR:2 
LNCipedia gene ID: APTR
Location (hg38): chr7:77662679-77697046
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1761 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT121671
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 21.4141 non-coding 
CPAT coding probability 3.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
APTR:2 yes no no no

Available literature

  1. Negishi (2014), A new lncRNA, APTR, associates with and represses the CDKN1A/p21 promoter by recruiting polycomb proteins., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM60-1:8
4.0 APTR:2
4.1 APTR:2
5.0 APTR:2
5.1 APTR:2
5.2 APTR:2