Transcript: APTR:22

Basic information

LNCipedia transcript ID: APTR:22 
LNCipedia gene ID: APTR
Location (hg38): chr7:77659093-77696266
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 584 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000214293.4|ENST00000430801.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -32.3545 non-coding 
CPAT coding probability 2.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
APTR:22 no no no no

Available literature

  1. Negishi (2014), A new lncRNA, APTR, associates with and represses the CDKN1A/p21 promoter by recruiting polycomb proteins., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 APTR:22
5.0 APTR:22
5.1 APTR:22
5.2 APTR:22