Transcript: APTR:4

Basic information

LNCipedia transcript ID: APTR:4 
LNCipedia gene ID: APTR
Location (hg38): chr7:77682065-77696425
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2844 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT121673
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.2207 non-coding 
CPAT coding probability 2.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
APTR:4 no no no no

Available literature

  1. Negishi (2014), A new lncRNA, APTR, associates with and represses the CDKN1A/p21 promoter by recruiting polycomb proteins., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM60-1:9
4.0 APTR:4
4.1 APTR:4
5.0 APTR:4
5.1 APTR:4
5.2 APTR:4