Transcript: APTR:9

Basic information

LNCipedia transcript ID: APTR:9 
HGNC Gene Symbol: APTR    
HGNC Full Gene Name: Alu-mediated CDKN1A/p21 transcriptional regulator
Ensembl Gene ID: ENSG00000214293
Ensembl Transcript ID: ENST00000440088
RefSeq ID: NR_134254
Location (hg38): chr7:77657660-77696265
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2029 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000440088; ENST00000440088.1; AC090421.1-001; OTTHUMT00000340787.1; NONHSAT121668; ENST00000440088.5; NR_134254.1
Alternative gene names: ENSG00000214293; AC090421.1; ENSG00000214293.4; OTTHUMG00000162596.1; RSBN1L-AS1; ENSG00000214293.8; APTR;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -51.891 non-coding 
CPAT coding probability 2.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
APTR:9 no no no no

Available literature

  1. Negishi (2014), A new lncRNA, APTR, associates with and represses the CDKN1A/p21 promoter by recruiting polycomb proteins., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM60-1:3
3.1 lnc-TMEM60-1:3
4.0 APTR:9
4.1 APTR:9
5.0 APTR:9
5.1 APTR:9
5.2 APTR:9