Transcript: AQP4-AS1:16

Basic information

LNCipedia transcript ID: AQP4-AS1:16 
LNCipedia gene ID: AQP4-AS1
Ensembl Gene ID: ENSG00000263677
Ensembl Transcript ID: ENST00000583852
Location (hg38): chr18:26688111-26689668
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 358 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000583852.1; RP11-17A19.2-001; OTTHUMT00000446931.1; NONHSAT058757
Alternative gene names: ENSG00000263677.1; RP11-17A19.2; OTTHUMG00000179531.1; FLJ30507; AC012588.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.8258 non-coding 
CPAT coding probability 2.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
AQP4-AS1:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TAF4B-2:1
4.0 lnc-TAF4B-2:1
4.1 AQP4-AS1:16
5.0 AQP4-AS1:16
5.1 AQP4-AS1:16
5.2 AQP4-AS1:16