Transcript: AQP4-AS1:7

Basic information

LNCipedia transcript ID: AQP4-AS1:7 
LNCipedia gene ID: AQP4-AS1
RefSeq ID: NR_026908
Location (hg38): chr18:26865308-26935946
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2392 bp
Exons: 8
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000568797.1; CHST9-AS1-001; OTTHUMT00000254913.4; NONHSAT058766; NR_026908; NR_026908.1
Alternative gene names: ENSG00000260372.2; CHST9-AS1; OTTHUMG00000131954.4; AQP4-AS1; FLJ30507


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.7909 non-coding 
CPAT coding probability 11.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
AQP4-AS1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TAF4B-4:4
4.0 AQP4-AS1:7
4.1 AQP4-AS1:7
5.0 AQP4-AS1:7
5.1 AQP4-AS1:7
5.2 AQP4-AS1:7