Transcript: ARHGEF38-IT1:1

Basic information

LNCipedia transcript ID: ARHGEF38-IT1:1 
HGNC Gene Symbol: ARHGEF38-IT1    
HGNC Full Gene Name: ARHGEF38 intronic transcript 1
Ensembl Gene ID: ENSG00000249885
Ensembl Transcript ID: ENST00000512262
RefSeq ID: NR_046840
Location (hg38): chr4:105561591-105570238
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 456 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000512262.1; ARHGEF38-IT1-001; OTTHUMT00000363593.1; NONHSAT097683; NR_046840.1
Alternative gene names: ENSG00000249885.1; ARHGEF38-IT1; OTTHUMG00000161056.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.0661 non-coding 
CPAT coding probability 4.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ARHGEF38-IT1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GSTCD-1:1
4.0 ARHGEF38-IT1:1
4.1 ARHGEF38-IT1:1
5.0 ARHGEF38-IT1:1
5.1 ARHGEF38-IT1:1
5.2 ARHGEF38-IT1:1