Transcript: ARLNC1:11

Basic information

LNCipedia transcript ID: ARLNC1:11 
HGNC Gene Symbol: ARLNC1    
HGNC Full Gene Name: androgen receptor regulated long noncoding RNA 1
Ensembl Gene ID: ENSG00000260896
Ensembl Transcript ID: ENST00000562231
Location (hg38): chr16:80828735-80892595
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2218 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000562231.1; RP11-314O13.1-001; OTTHUMT00000434799.1; NONHSAT143911; ENST00000562231.5
Alternative gene names: ENSG00000260896.1; RP11-314O13.1; OTTHUMG00000177012.1; ENSG00000260896.5; PRCAT47; LINC02170


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.2297 non-coding 
CPAT coding probability 18.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ARLNC1:11 no no no no

Available literature

  1. Zhang (2018), Analysis of the androgen receptor-regulated lncRNA landscape identifies a role for ARLNC1 in prostate cancer progression., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDYL2-4:2
4.0 lnc-CDYL2-4:2
4.1 lnc-CDYL2-4:2
5.0 lnc-CDYL2-4:2
5.1 ARLNC1:5
5.2 ARLNC1:11