Transcript: ARLNC1:4

Basic information

LNCipedia transcript ID: ARLNC1:4 
LNCipedia gene ID: ARLNC1
RefSeq ID: NR_131947
Location (hg38): chr16:80828735-80892596
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2333 bp
Exons: 4
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_131947.1
Alternative gene names: PRCAT47


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 0.2297 non-coding 
CPAT coding probability 10.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ARLNC1:4 no no no no

Available literature

  1. Zhang (2018), Analysis of the androgen receptor-regulated lncRNA landscape identifies a role for ARLNC1 in prostate cancer progression., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 ARLNC1:4
5.1 ARLNC1:4
5.2 ARLNC1:4