Transcript: ASAP1-IT2:1

Basic information

LNCipedia transcript ID: ASAP1-IT2:1 
HGNC Gene Symbol: ASAP1-IT2    
HGNC Full Gene Name: ASAP1 intronic transcript 2
Ensembl Gene ID: ENSG00000280543
Ensembl Transcript ID: ENST00000626977
RefSeq ID: NR_045385
Location (hg38): chr8:130082738-130084768
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2031 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT129148; NR_045385; ENST00000626977.1; NR_045385.1
Alternative gene names: ENSG00000280543.1; ASAP1-IT2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.2847 non-coding 
CPAT coding probability 0.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ASAP1-IT2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM49B-2:1
4.0 ASAP1-IT2:1
4.1 ASAP1-IT2:1
5.0 ASAP1-IT2:1
5.1 ASAP1-IT2:1
5.2 ASAP1-IT2:1