Transcript: ATP1A1-AS1:1

Basic information

LNCipedia transcript ID: ATP1A1-AS1:1 
LNCipedia gene ID: ATP1A1-AS1
RefSeq ID: NR_027646
Location (hg38): chr1:116392865-116418622
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 562 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT005424; NR_027646; NR_027646.1
Alternative gene names: MGC16179; ATP1A1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -164.8688 non-coding 
CPAT coding probability 5.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ATP1A1-AS1:1 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATP1A1OS-5:2
4.0 ATP1A1-AS1:1
4.1 ATP1A1-AS1:1
5.0 ATP1A1-AS1:1
5.1 ATP1A1-AS1:1
5.2 ATP1A1-AS1:1