Transcript: ATP1A1-AS1:3

Basic information

LNCipedia transcript ID: ATP1A1-AS1:3 
LNCipedia gene ID: ATP1A1-AS1
RefSeq ID: NR_024125
Location (hg38): chr1:116404714-116418583
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1828 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT005431; NR_024125; NR_024125.2
Alternative gene names: MGC16179; ATP1A1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -108.36 non-coding 
CPAT coding probability 15.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ATP1A1-AS1:3 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATP1A1OS-5:3
4.0 ATP1A1-AS1:3
4.1 ATP1A1-AS1:3
5.0 ATP1A1-AS1:3
5.1 ATP1A1-AS1:3
5.2 ATP1A1-AS1:3