Transcript: ATP1A1-AS1:4

Basic information

LNCipedia transcript ID: ATP1A1-AS1:4 
HGNC Gene Symbol: ATP1A1-AS1    
HGNC Full Gene Name: ATP1A1 antisense RNA 1
Ensembl Gene ID: ENSG00000203865
Ensembl Transcript ID: ENST00000493908
RefSeq ID: NR_027645
Location (hg38): chr1:116399000-116418575
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 668 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT005428; NR_027645; ENST00000493908.1; NR_027645.1
Alternative gene names: ENSG00000203865.5; ATP1A1OS; ENSG00000203865.9; ATP1A1-AS1; MGC16179


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -164.8688 non-coding 
CPAT coding probability 5.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ATP1A1-AS1:4 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATP1A1OS-5:5
4.0 ATP1A1-AS1:4
4.1 ATP1A1-AS1:4
5.0 ATP1A1-AS1:4
5.1 ATP1A1-AS1:4
5.2 ATP1A1-AS1:4