Transcript: ATP2A1-AS1:3

Basic information

LNCipedia transcript ID: ATP2A1-AS1:3 
LNCipedia gene ID: ATP2A1-AS1
RefSeq ID: NR_046290
Location (hg38): chr16:28878957-28879921
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 528 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT141539; NR_046290; NR_046290.1
Alternative gene names: ; ATP2A1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -411.24 non-coding 
CPAT coding probability 12.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
ATP2A1-AS1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RABEP2-1:4
4.0 ATP2A1-AS1:3
4.1 ATP2A1-AS1:3
5.0 ATP2A1-AS1:3
5.1 ATP2A1-AS1:3
5.2 ATP2A1-AS1:3