Transcript: ATP2A1-AS1:5

Basic information

LNCipedia transcript ID: ATP2A1-AS1:5 
HGNC Gene Symbol: ATP2A1-AS1    
HGNC Full Gene Name: ATP2A1 antisense RNA 1
Ensembl Gene ID: ENSG00000260442
Ensembl Transcript ID: ENST00000566956
Location (hg38): chr16:28878957-28879920
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 530 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000566956.1; RP11-22P6.3-001; OTTHUMT00000432689.1
Alternative gene names: ENSG00000260442.1; RP11-22P6.3; OTTHUMG00000176592.1; ENSG00000260442.5; ATP2A1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -412.6759 non-coding 
CPAT coding probability 13.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
ATP2A1-AS1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RABEP2-1:1
4.0 ATP2A1-AS1:5
4.1 ATP2A1-AS1:5
5.0 ATP2A1-AS1:5
5.1 ATP2A1-AS1:5
5.2 ATP2A1-AS1:5