Transcript: ATP2B1-AS1:11

Basic information

LNCipedia transcript ID: ATP2B1-AS1:11 
LNCipedia gene ID: ATP2B1-AS1
Location (hg38): chr12:89709003-89711492
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2464 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000271614.1|FTMT24700011142.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
RGAGPLPR 100% sense-2
Lee translation initiation sites non-coding 
PhyloCSF score -91.372 non-coding 
CPAT coding probability 5.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
ATP2B1-AS1:11 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC00936:5
5.0 LINC00936:5
5.1 ATP2B1-AS1:5
5.2 ATP2B1-AS1:11