Transcript: ATP2B1-AS1:12

Basic information

LNCipedia transcript ID: ATP2B1-AS1:12 
LNCipedia gene ID: ATP2B1-AS1
Location (hg38): chr12:89709491-89712830
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3340 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA302:1
Alternative gene names:

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
RGAGPLPR 100% sense-2
Lee translation initiation sites non-coding 
PhyloCSF score -58.1992 non-coding 
CPAT coding probability 8.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
ATP2B1-AS1:12 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC00936:3
4.1 LINC00936:3
5.0 LINC00936:3
5.1 ATP2B1-AS1:6
5.2 ATP2B1-AS1:12