Transcript: ATP2B1-AS1:8

Basic information

LNCipedia transcript ID: ATP2B1-AS1:8 
LNCipedia gene ID: ATP2B1-AS1
RefSeq ID: NR_028138
Location (hg38): chr12:89708955-89711952
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2998 bp
Exons: 1
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_028138; NR_028138.1
Alternative gene names: ; LINC00936

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
RGAGPLPR 100% sense-1
Lee translation initiation sites 0 non-coding 
PhyloCSF score -91.372 non-coding 
CPAT coding probability 8.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
ATP2B1-AS1:8 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMTC3-15:1
4.0 LINC00936:1
4.1 LINC00936:1
5.0 LINC00936:1
5.1 ATP2B1-AS1:2
5.2 ATP2B1-AS1:8