Transcript: ATP2B1-AS1:9

Basic information

LNCipedia transcript ID: ATP2B1-AS1:9 
HGNC Gene Symbol: ATP2B1-AS1    
HGNC Full Gene Name: ATP2B1 antisense RNA 1
Ensembl Gene ID: ENSG00000271614
Ensembl Transcript ID: ENST00000605386
Location (hg38): chr12:89708959-89712590
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3632 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT029827; ENST00000605386.1
Alternative gene names: ENSG00000271614.1; LINC00936; ; ATP2B1-AS1

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
RGAGPLPR 100% sense-3
Lee translation initiation sites 0 non-coding 
PhyloCSF score -58.1992 non-coding 
CPAT coding probability 8.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
ATP2B1-AS1:9 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMTC3-15:2
4.0 LINC00936:2
4.1 LINC00936:2
5.0 LINC00936:2
5.1 ATP2B1-AS1:3
5.2 ATP2B1-AS1:9