Transcript: ATP2C2-AS1:4

Basic information

LNCipedia transcript ID: ATP2C2-AS1:4 
HGNC Gene Symbol: ATP2C2-AS1    
HGNC Full Gene Name: ATP2C2 antisense RNA 1
Ensembl Gene ID: ENSG00000261286
Ensembl Transcript ID: ENST00000565700
Location (hg38): chr16:84459259-84467361
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2998 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000508094; ENST00000565700.1; RP11-517C16.2-001; OTTHUMT00000433419.1; NONHSAT144067
Alternative gene names: ENSG00000248612; ENSG00000261286.1; RP11-517C16.2; OTTHUMG00000176738.1; ATP2C2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.5521 non-coding 
CPAT coding probability 60.26% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
ATP2C2-AS1:4 yes no no no

Available literature

  1. Li (2018), Activity dependent LoNA regulates translation by coordinating rRNA transcription and methylation., Nat Commun
  2. Miao (2017), The Effect of Botulinum Toxin Type A on Expression Profiling of Long Noncoding RNAs in Human Dermal Fibroblasts., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KIAA1609-1:1
3.1 lnc-KIAA1609-1:1
4.0 lnc-KIAA1609-1:1
4.1 lnc-KIAA1609-1:1
5.0 lnc-KIAA1609-1:1
5.1 ATP2C2-AS1:2
5.2 ATP2C2-AS1:4