Transcript: ATP2C2-AS1:5

Basic information

LNCipedia transcript ID: ATP2C2-AS1:5 
LNCipedia gene ID: ATP2C2-AS1
Location (hg38): chr16:84460276-84461733
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 645 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT144068
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.9699 non-coding 
CPAT coding probability 10.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ATP2C2-AS1:5 yes no no no

Available literature

  1. Li (2018), Activity dependent LoNA regulates translation by coordinating rRNA transcription and methylation., Nat Commun
  2. Miao (2017), The Effect of Botulinum Toxin Type A on Expression Profiling of Long Noncoding RNAs in Human Dermal Fibroblasts., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA1609-1:2
4.0 lnc-KIAA1609-1:2
4.1 lnc-KIAA1609-1:2
5.0 lnc-KIAA1609-1:2
5.1 ATP2C2-AS1:3
5.2 ATP2C2-AS1:5