Transcript: ATXN8OS:7

Basic information

LNCipedia transcript ID: ATXN8OS:7 
LNCipedia gene ID: ATXN8OS
Location (hg38): chr13:70115150-70131021
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 594 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00021821
Alternative gene names: XLOC_010422; linc-C13orf34-3; NCRNA00003


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -91.6813 non-coding 
CPAT coding probability 2.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ATXN8OS:7 no no no no

Available literature

  1. Imam (2015), The lncRNA NRON modulates HIV-1 replication in a NFAT-dependent manner and is differentially regulated by early and late viral proteins., Sci Rep
  2. Quek (2015), lncRNAdb v2.0: expanding the reference database for functional long noncoding RNAs., Nucleic Acids Res.
  3. Qureshi (2012), Emerging roles of non-coding RNAs in brain evolution, development, plasticity and disease., Nat. Rev. Neurosci.
  4. Daughters (2009), RNA gain-of-function in spinocerebellar ataxia type 8., PLoS Genet.
  5. Chen (2008), SCA8 mRNA expression suggests an antisense regulation of KLHL1 and correlates to SCA8 pathology., Brain Res.
  6. Moseley (2006), Bidirectional expression of CUG and CAG expansion transcripts and intranuclear polyglutamine inclusions in spinocerebellar ataxia type 8., Nat. Genet.
  7. Mutsuddi (2004), The spinocerebellar ataxia 8 noncoding RNA causes neurodegeneration and associates with staufen in Drosophila., Curr. Biol.
  8. Benzow (2002), The KLHL1-antisense transcript ( KLHL1AS) is evolutionarily conserved., Mamm. Genome
  9. Nemes (2000), The SCA8 transcript is an antisense RNA to a brain-specific transcript encoding a novel actin-binding protein (KLHL1)., Hum. Mol. Genet.
  10. Koob (1999), An untranslated CTG expansion causes a novel form of spinocerebellar ataxia (SCA8), Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BORA-3:1
3.1 lnc-BORA-3:3
4.0 ATXN8OS:7
4.1 ATXN8OS:7
5.0 ATXN8OS:7
5.1 ATXN8OS:7
5.2 ATXN8OS:7