Transcript: B3GALT5-AS1:1

Basic information

LNCipedia transcript ID: B3GALT5-AS1:1 
LNCipedia gene ID: B3GALT5-AS1
Location (hg38): chr21:39597104-39613067
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 6178 bp
Exons: 6
Sources: NONCODE v4
Alternative transcript names: NONHSAT082200
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.2838 non-coding 
CPAT coding probability 5.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
B3GALT5-AS1:1 no no no no

Available literature

  1. Reymond (2002), Nineteen additional unpredicted transcripts from human chromosome 21., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C21orf88-1:1
4.0 B3GALT5-AS1:1
4.1 B3GALT5-AS1:1
5.0 B3GALT5-AS1:1
5.1 B3GALT5-AS1:1
5.2 B3GALT5-AS1:1