Transcript: B3GALT5-AS1:2

Basic information

LNCipedia transcript ID: B3GALT5-AS1:2 
LNCipedia gene ID: B3GALT5-AS1
Location (hg38): chr21:39605607-39612822
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1350 bp
Exons: 3
Sources: Refseq - Dec 2014
Alternative transcript names: NR_026543
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -29.4679 non-coding 
CPAT coding probability 6.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
B3GALT5-AS1:2 no no no no

Available literature

  1. Reymond (2002), Nineteen additional unpredicted transcripts from human chromosome 21., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C21orf88-1:3
4.0 B3GALT5-AS1:2
4.1 B3GALT5-AS1:2
5.0 B3GALT5-AS1:2
5.1 B3GALT5-AS1:2
5.2 B3GALT5-AS1:2