Transcript: B3GALT5-AS1:7

Basic information

LNCipedia transcript ID: B3GALT5-AS1:7 
HGNC Gene Symbol: B3GALT5-AS1    
HGNC Full Gene Name: B3GALT5 antisense RNA 1
Ensembl Gene ID: ENSG00000184809
Ensembl Transcript ID: ENST00000489821
Location (hg38): chr21:39597147-39599656
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1159 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT082201; ENST00000489821.4
Alternative gene names: ENSG00000184809.12; B3GALT5-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.2838 non-coding 
CPAT coding probability 26.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
B3GALT5-AS1:7 no no no no

Available literature

  1. Reymond (2002), Nineteen additional unpredicted transcripts from human chromosome 21., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C21orf88-1:4
4.0 B3GALT5-AS1:7
4.1 B3GALT5-AS1:7
5.0 B3GALT5-AS1:7
5.1 B3GALT5-AS1:7
5.2 B3GALT5-AS1:7