Transcript: B3GALT5-AS1:9

Basic information

LNCipedia transcript ID: B3GALT5-AS1:9 
LNCipedia gene ID: B3GALT5-AS1
RefSeq ID: NR_026542
Location (hg38): chr21:39597147-39612822
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1452 bp
Exons: 3
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_026542.1
Alternative gene names: B3GALT5-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 9.2838 non-coding 
CPAT coding probability 27.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
B3GALT5-AS1:9 no no no no

Available literature

  1. Reymond (2002), Nineteen additional unpredicted transcripts from human chromosome 21., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 B3GALT5-AS1:9
5.1 B3GALT5-AS1:9
5.2 B3GALT5-AS1:9