Transcript: BAALC-AS1:13

Basic information

LNCipedia transcript ID: BAALC-AS1:13 
LNCipedia gene ID: BAALC-AS1
Location (hg38): chr8:103190964-103285905
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 551 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000523614; ENST00000523614.1; RP11-318M2.2-008; OTTHUMT00000380350.1; NONHSAT128162
Alternative gene names: ENSG00000247081; RP11-318M2.2; ENSG00000247081.2; OTTHUMG00000164798.3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -350.219 non-coding 
CPAT coding probability 11.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BAALC-AS1:13 no no no no

Available literature

  1. Chen (2018), LncFZD6 initiates Wnt/β-catenin and liver TIC self-renewal through BRG1-mediated FZD6 transcriptional activation., Oncogene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C8orf56-1:5
3.1 lnc-C8orf56-1:5
4.0 BAALC-AS1:13
4.1 BAALC-AS1:13
5.0 BAALC-AS1:13
5.1 BAALC-AS1:13
5.2 BAALC-AS1:13