Transcript: BACH1-IT2:4

Basic information

LNCipedia transcript ID: BACH1-IT2:4 
LNCipedia gene ID: BACH1-IT2
Location (hg38): chr21:29372501-29373566
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 388 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00028830; ENST00000436529.1; BACH1-IT2-001; OTTHUMT00000171987.1; NONHSAT081643
Alternative gene names: XLOC_013905; linc-KRTAP13-1-5; ENSG00000228817.1; BACH1-IT2; OTTHUMG00000078880.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -127.0249 non-coding 
CPAT coding probability 1.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BACH1-IT2:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C21orf7-1:1
3.1 lnc-C21orf7-2:1
4.0 BACH1-IT2:4
4.1 BACH1-IT2:4
5.0 BACH1-IT2:4
5.1 BACH1-IT2:4
5.2 BACH1-IT2:4