Transcript: BARX1-DT:10

Basic information

LNCipedia transcript ID: BARX1-DT:10 
LNCipedia gene ID: BARX1-DT
Location (hg38): chr9:93955527-93969972
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 394 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000235601.1|ENCT00000448184.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 19.0101 non-coding 
CPAT coding probability 0.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BARX1-DT:10 no no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 BARX1-AS1:5
5.0 BARX1-AS1:5
5.1 BARX1-DT:4
5.2 BARX1-DT:10