Transcript: BARX1-DT:11

Basic information

LNCipedia transcript ID: BARX1-DT:11 
LNCipedia gene ID: BARX1-DT
Location (hg38): chr9:93955527-93981876
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 8119 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000235601.1|MICT00000362793.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 19.0101 non-coding 
CPAT coding probability 23.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BARX1-DT:11 no no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 BARX1-AS1:6
5.0 BARX1-AS1:6
5.1 BARX1-DT:5
5.2 BARX1-DT:11