Transcript: BARX1-DT:13

Basic information

LNCipedia transcript ID: BARX1-DT:13 
HGNC Gene Symbol: BARX1-DT    
HGNC Full Gene Name: BARX1 divergent transcript
Ensembl Gene ID: ENSG00000235601
Ensembl Transcript ID: ENST00000453045
Location (hg38): chr9:93955834-93957922
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1445 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015720; ENST00000453045; ENST00000453045.1; RP11-231K24.2-001; OTTHUMT00000053166.1; NONHSAT133281
Alternative gene names: XLOC_007466; linc-PTPDC1-1; ENSG00000235601; RP11-231K24.2; ENSG00000235601.1; OTTHUMG00000020256.1; BARX1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -118.2034 non-coding 
CPAT coding probability 15.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BARX1-DT:13 no no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTPDC1-1:2
3.1 lnc-PTPDC1-1:2
4.0 BARX1-AS1:2
4.1 BARX1-AS1:2
5.0 BARX1-AS1:2
5.1 BARX1-DT:7
5.2 BARX1-DT:13