Transcript: BARX1-DT:9

Basic information

LNCipedia transcript ID: BARX1-DT:9 
LNCipedia gene ID: BARX1-DT
Location (hg38): chr9:93955527-93959140
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 377 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000235601.1|ENST00000454594.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -91.1698 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BARX1-DT:9 no no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 BARX1-AS1:3
5.0 BARX1-AS1:3
5.1 BARX1-DT:3
5.2 BARX1-DT:9