Transcript: BASP1-AS1:18

Basic information

LNCipedia transcript ID: BASP1-AS1:18 
LNCipedia gene ID: BASP1-AS1
Location (hg38): chr5:17142713-17217452
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4434 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000215196.4|MICT00000279379.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 11.5548 non-coding 
CPAT coding probability 80.19% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
BASP1-AS1:18 no no no no

Available literature

  1. Vafaee (2017), Functional prediction of long non-coding RNAs in ovarian cancer-associated fibroblasts indicate a potential role in metastasis., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-MYO10-1:5
5.0 lnc-MYO10-1:5
5.1 BASP1-AS1:3
5.2 BASP1-AS1:18