Transcript: BASP1-AS1:21

Basic information

LNCipedia transcript ID: BASP1-AS1:21 
LNCipedia gene ID: BASP1-AS1
RefSeq ID: NR_027253
Location (hg38): chr5:17130028-17217422
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3316 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT100620; NR_027253; NR_027253.1
Alternative gene names: LOC285696


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.3903 non-coding 
CPAT coding probability 89.45% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
BASP1-AS1:21 no no no no

Available literature

  1. Vafaee (2017), Functional prediction of long non-coding RNAs in ovarian cancer-associated fibroblasts indicate a potential role in metastasis., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MYO10-1:3
4.0 lnc-MYO10-1:3
4.1 lnc-MYO10-1:3
5.0 lnc-MYO10-1:3
5.1 BASP1-AS1:6
5.2 BASP1-AS1:21