Transcript: BASP1-AS1:22

Basic information

LNCipedia transcript ID: BASP1-AS1:22 
LNCipedia gene ID: BASP1-AS1
Location (hg38): chr5:17169256-17217399
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2381 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000538380; ENST00000538380.1; AC091878.1-201; NONHSAT100622
Alternative gene names: ENSG00000215196; AC091878.1; ENSG00000215196.3; OTTHUMG00000131059.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -144.8736 non-coding 
CPAT coding probability 89.92% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
BASP1-AS1:22 no no no no

Available literature

  1. Vafaee (2017), Functional prediction of long non-coding RNAs in ovarian cancer-associated fibroblasts indicate a potential role in metastasis., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MYO10-1:1
3.1 lnc-MYO10-1:1
4.0 lnc-MYO10-1:1
4.1 lnc-MYO10-1:1
5.0 lnc-MYO10-1:1
5.1 BASP1-AS1:7
5.2 BASP1-AS1:22