Transcript: BASP1-AS1:30

Basic information

LNCipedia transcript ID: BASP1-AS1:30 
HGNC Gene Symbol: BASP1-AS1    
HGNC Full Gene Name: BASP1 antisense RNA 1
Ensembl Gene ID: ENSG00000215196
Ensembl Transcript ID: ENST00000399760
Location (hg38): chr5:17130028-17217047
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2941 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000399760; ENST00000399760.2; AC091878.1-001; OTTHUMT00000253713.3
Alternative gene names: ENSG00000215196; AC091878.1; ENSG00000215196.3; OTTHUMG00000131059.3; ENSG00000215196.4; AC026790.1; BASP1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.3903 non-coding 
CPAT coding probability 89.64% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
BASP1-AS1:30 no no no no

Available literature

  1. Vafaee (2017), Functional prediction of long non-coding RNAs in ovarian cancer-associated fibroblasts indicate a potential role in metastasis., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MYO10-1:2
3.1 lnc-MYO10-1:2
4.0 lnc-MYO10-1:2
4.1 lnc-MYO10-1:2
5.0 lnc-MYO10-1:2
5.1 BASP1-AS1:15
5.2 BASP1-AS1:30