Transcript: BBOX1-AS1:1

Basic information

LNCipedia transcript ID: BBOX1-AS1:1 
HGNC Gene Symbol: BBOX1-AS1    
HGNC Full Gene Name: BBOX1 antisense RNA 1
Ensembl Gene ID: ENSG00000254560
Ensembl Transcript ID: ENST00000525302
RefSeq ID: NR_125767
Location (hg38): chr11:27062983-27220113
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 583 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000525302.1; RP11-1L12.3-001; OTTHUMT00000387954.1; NONHSAT018476; NR_125767; ENST00000525302.5; NR_125767.1
Alternative gene names: ENSG00000254560.1; RP11-1L12.3; OTTHUMG00000166122.1; ENSG00000254560.5; BBOX1-AS1;

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.3596 non-coding 
CPAT coding probability 7.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BBOX1-AS1:1 yes no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC34-1:1
4.0 BBOX1-AS1:1
4.1 BBOX1-AS1:1
5.0 BBOX1-AS1:1
5.1 BBOX1-AS1:1
5.2 BBOX1-AS1:1