Transcript: BBOX1-AS1:10

Basic information

LNCipedia transcript ID: BBOX1-AS1:10 
LNCipedia gene ID: BBOX1-AS1
Location (hg38): chr11:27174218-27218735
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 361 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000254560.1|FTMT24100032268.1
Alternative gene names:

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -96.3596 non-coding 
CPAT coding probability 2.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BBOX1-AS1:10 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 BBOX1-AS1:10
5.0 BBOX1-AS1:10
5.1 BBOX1-AS1:10
5.2 BBOX1-AS1:10