Transcript: BBOX1-AS1:12

Basic information

LNCipedia transcript ID: BBOX1-AS1:12 
LNCipedia gene ID: BBOX1-AS1
Location (hg38): chr11:27047186-27218735
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 471 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000254560.1|ENST00000526061.1
Alternative gene names:

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -5.4271 non-coding 
CPAT coding probability 2.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BBOX1-AS1:12 yes no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 BBOX1-AS1:12
5.0 BBOX1-AS1:12
5.1 BBOX1-AS1:12
5.2 BBOX1-AS1:12