Transcript: BBOX1-AS1:2

Basic information

LNCipedia transcript ID: BBOX1-AS1:2 
LNCipedia gene ID: BBOX1-AS1
RefSeq ID: NR_125766
Location (hg38): chr11:27062983-27220113
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 943 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_125766; NR_125766.1
Alternative gene names: ; BBOX1-AS1

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 0.1079 non-coding 
CPAT coding probability 2.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BBOX1-AS1:2 yes no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC34-1:6
4.0 BBOX1-AS1:2
4.1 BBOX1-AS1:2
5.0 BBOX1-AS1:2
5.1 BBOX1-AS1:2
5.2 BBOX1-AS1:2