Transcript: BBOX1-AS1:4

Basic information

LNCipedia transcript ID: BBOX1-AS1:4 
HGNC Gene Symbol: BBOX1-AS1    
HGNC Full Gene Name: BBOX1 antisense RNA 1
Ensembl Gene ID: ENSG00000254560
Ensembl Transcript ID: ENST00000530430
Location (hg38): chr11:27063020-27220086
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 879 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000530430.1; RP11-1L12.3-004; OTTHUMT00000387955.1; NONHSAT018477
Alternative gene names: ENSG00000254560.1; RP11-1L12.3; OTTHUMG00000166122.1; ENSG00000254560.5; BBOX1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.1079 non-coding 
CPAT coding probability 2.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BBOX1-AS1:4 yes no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC34-1:3
4.0 BBOX1-AS1:4
4.1 BBOX1-AS1:4
5.0 BBOX1-AS1:4
5.1 BBOX1-AS1:4
5.2 BBOX1-AS1:4