Transcript: BBOX1-AS1:7

Basic information

LNCipedia transcript ID: BBOX1-AS1:7 
LNCipedia gene ID: BBOX1-AS1
Location (hg38): chr11:27217070-27218672
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 425 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019596; NONHSAT018481
Alternative gene names: XLOC_009398; linc-SLC5A12;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.3596 non-coding 
CPAT coding probability 0.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BBOX1-AS1:7 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCDC34-1:1
3.1 lnc-CCDC34-1:5
4.0 BBOX1-AS1:7
4.1 BBOX1-AS1:7
5.0 BBOX1-AS1:7
5.1 BBOX1-AS1:7
5.2 BBOX1-AS1:7