Transcript: BBOX1-AS1:8

Basic information

LNCipedia transcript ID: BBOX1-AS1:8 
LNCipedia gene ID: BBOX1-AS1
Location (hg38): chr11:27233624-27234164
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 541 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000254560.1|HBMT00000244419.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -464.6233 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BBOX1-AS1:8 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 BBOX1-AS1:8
5.0 BBOX1-AS1:8
5.1 BBOX1-AS1:8
5.2 BBOX1-AS1:8