Transcript: BDNF-AS:14

Basic information

LNCipedia transcript ID: BDNF-AS:14 
LNCipedia gene ID: BDNF-AS
Location (hg38): chr11:27506872-27513273
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 300 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019262; NONHSAT018499
Alternative gene names: XLOC_009092; linc-METT5D1; BT2A; BT2B; BT2C; BT2D; NCRNA00049; BDNF-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -162.7335 non-coding 
CPAT coding probability 0.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BDNF-AS:14 no no no no

Available literature

  1. Zhong (2017), Knockdown of long noncoding antisense RNA brain-derived neurotrophic factor attenuates hypoxia/reoxygenation-induced nerve cell apoptosis through the BDNF-TrkB-PI3K/Akt signaling pathway., Neuroreport
  2. Magistri (2015), Transcriptomics Profiling of Alzheimer's Disease Reveal Neurovascular Defects, Altered Amyloid-β Homeostasis, and Deregulated Expression of Long Noncoding RNAs., J. Alzheimers Dis.
  3. Pedram Fatemi (2015), Screening for Small-Molecule Modulators of Long Noncoding RNA-Protein Interactions Using AlphaScreen., J Biomol Screen
  4. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry
  5. Kapusta (2013), Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs., PLoS Genet.
  6. Modarresi (2012), Inhibition of natural antisense transcripts in vivo results in gene-specific transcriptional upregulation., Nat. Biotechnol.
  7. Liu (2005), Human brain derived neurotrophic factor (BDNF) genes, splicing patterns, and assessments of associations with substance abuse and Parkinson's Disease., Am. J. Med. Genet. B Neuropsychiatr. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BBOX1-1:8
3.1 lnc-METTL15-4:8
4.0 BDNF-AS:14
4.1 BDNF-AS:14
5.0 BDNF-AS:14
5.1 BDNF-AS:14
5.2 BDNF-AS:14