Transcript: BFSP2-AS1:3

Basic information

LNCipedia transcript ID: BFSP2-AS1:3 
HGNC Gene Symbol: BFSP2-AS1    
HGNC Full Gene Name: BFSP2 antisense RNA 1
Ensembl Gene ID: ENSG00000249993
Ensembl Transcript ID: ENST00000515542
Location (hg38): chr3:133429269-133455776
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 894 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000515542.1; RP11-91K8.1-001; OTTHUMT00000357035.1; NONHSAT092185
Alternative gene names: ENSG00000249993.1; RP11-91K8.1; OTTHUMG00000159721.1; BFSP2-AS1; MGC2848


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.9228 non-coding 
CPAT coding probability 8.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BFSP2-AS1:3 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TOPBP1-1:1
4.0 BFSP2-AS1:3
4.1 BFSP2-AS1:3
5.0 BFSP2-AS1:3
5.1 BFSP2-AS1:3
5.2 BFSP2-AS1:3