Transcript: BGLT3:1

Basic information

LNCipedia transcript ID: BGLT3:1 
LNCipedia gene ID: BGLT3
Location (hg38): chr11:5244554-5245547
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 994 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000564523.1; CTD-2643I7.1-001; OTTHUMT00000422245.1; NONHSAT017669
Alternative gene names: ENSG00000260629.1; CTD-2643I7.1; OTTHUMG00000173138.1; BGLT3; LINC01083; BGL3; lncRNA-BGL3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -95.4558 non-coding 
CPAT coding probability 0.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BGLT3:1 no no no no

Available literature

  1. Guo (2015), A long noncoding RNA critically regulates Bcr-Abl-mediated cellular transformation by acting as a competitive endogenous RNA., Oncogene
  2. Chan (2013), A signature motif mediating selective interactions of BCL11A with the NR2E/F subfamily of orphan nuclear receptors., Nucleic Acids Res.
  3. Kiefer (2011), Distinct Ldb1/NLI complexes orchestrate γ-globin repression and reactivation through ETO2 in human adult erythroid cells., Blood


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HBG1-1:1
4.0 BGLT3:1
4.1 BGLT3:1
5.0 BGLT3:1
5.1 BGLT3:1
5.2 BGLT3:1