Transcript: BLACAT1:12

Basic information

LNCipedia transcript ID: BLACAT1:12 
LNCipedia gene ID: BLACAT1
Location (hg38): chr1:205435994-205445151
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2837 bp
Exons: 6
Sources: NONCODE v4
Alternative transcript names: NONHSAT008996
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.2177 non-coding 
CPAT coding probability 8.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BLACAT1:12 no no no no

Available literature

  1. He (2013), linc-UBC1 physically associates with polycomb repressive complex 2 (PRC2) and acts as a negative prognostic factor for lymph node metastasis and survival in bladder cancer., Biochim. Biophys. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LEMD1-1:4
4.0 lnc-LEMD1-1:4
4.1 lnc-LEMD1-1:4
5.0 lnc-LEMD1-1:4
5.1 BLACAT1:5
5.2 BLACAT1:12