Transcript: BLACAT1:14

Basic information

LNCipedia transcript ID: BLACAT1:14 
HGNC Gene Symbol: BLACAT1    
HGNC Full Gene Name: bladder cancer associated transcript 1
Ensembl Gene ID: ENSG00000281406
Ensembl Transcript ID: ENST00000626538
Location (hg38): chr1:205434886-205437879
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2994 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000626538.1
Alternative gene names: ENSG00000281406.1; BLACAT1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -97.6225 non-coding 
CPAT coding probability 6.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BLACAT1:14 no no no no

Available literature

  1. He (2013), linc-UBC1 physically associates with polycomb repressive complex 2 (PRC2) and acts as a negative prognostic factor for lymph node metastasis and survival in bladder cancer., Biochim. Biophys. Acta


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-LEMD1-1:7
4.1 lnc-LEMD1-1:7
5.0 lnc-LEMD1-1:7
5.1 BLACAT1:7
5.2 BLACAT1:14