Transcript: BNC2-AS1:11

Basic information

LNCipedia transcript ID: BNC2-AS1:11 
LNCipedia gene ID: BNC2-AS1
Location (hg38): chr9:16726809-16727744
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 862 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000234779.1|MICT00000356127.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -221.6777 non-coding 
CPAT coding probability 19.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
BNC2-AS1:11 yes no no no

Available literature

  1. Liu (2017), Increased Expression of Long Noncoding RNA RP11-62F24.2 in Gastric Cancer and Its Clinical Significance., Clin. Lab.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CNTLN-2:3
5.0 lnc-CNTLN-2:3
5.1 BNC2-AS1:4
5.2 BNC2-AS1:11